Adding free plugins to Cytoscape also provides functionality including literature mining, network inference, topological clustering, and network comparison.Ī variety of apps extend Cytoscape's basic functionality by adding support for automatic data import, pathway analysis, and more. Cytoscape can create visualizations of a variety of different types of networks, including molecular and genetic, social networks, and semantic Web. Cn3D simultaneously displays structure, sequence, and alignment, and now has powerful annotation and alignment editing features.Ĭytoscape is a free, open source visualization tool for modeling complex networks and integrating network points with attribute data. Cn3D is provided for Windows and Macintosh, and can be compiled on Unix.
#Web based tools for sequence analysis license#
NIH Library has one static license (use in the library).Ĭn3D ("see in 3D") is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez Structure database. Additionally, it provides contig reports, read mapping, SNP, and DIP detection. Its functionality includes de novo assembly of Sanger, 454, Illumina Genome Analyzer and SOLiD data and also de novo assembly from a combination of these platforms.
#Web based tools for sequence analysis software#
NIH Library has one static license (use in the library) or register to access the floating license (use from the NIH network).īRB-ArrayTools is an integrated package for the visualization and statistical analysis of Microarray gene expression, copy number, methylation and RNA-Seq data.ĬLC Genomics Workbench is software for analyzing and visualizing next generation sequencing data. The library's license includes QSeq with ArrayStar for RNA-Seq, ChIP-Seq and miRNA analysis. It also provides visualization tools and gene ontology integration. ToolĪrrayStar is software from DNASTAR for analyzing gene expression data. NOTE: Access to these resources are for NIH staff only. Windows 10, 64-bit, 768 GB RAM, 圆4-based processor, and 12 TB Storage Red Hat Linux 6, 64-bit, 512 GB RAM, 28 cores, and 24 TB Storage Windows 10, 64-bit, 768 GB RAM, 8 cores, and 12 TB Storage To use a workstation, reserve online, call the NIH Library at 30, or visit the Information Desk. These workstations, located in the main reading room, are dedicated to high-throughput data analysis such as next generation sequence (NGS) data analysis or microarray data analysis. The Bioinformatics Support Program provides three workstations to NIH staff that offer access to licensed and open source bioinformatics software programs.
If you would like to recommend additional resources, please submit a request.
The licenses are either floating (access is provided from any NIH computer) and/or static (access is provided from one of the NIH Library Bioinformatics workstations). The NIH Library has secured licensing for a wide range of bioinformatics resources.
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